The Department of Engineering at Colorado State University-Pueblo offers four engineering programs: 
- The Bachelor of Science in Engineering with a Mechatronics specialization (BSE-Mechatronics) is a 4-year program that can be completed at CSU-Pueblo.
- The Bachelor of Science in Industrial Engineering (BSIE) is a 4-year program that can be completed at CSU-Pueblo.
- The Master of Science in Industrial and Systems Engineering (MSISE) is a 33 hour program.
- The Pre Engineering program allows students to take 2 years of courses at CSU-Pueblo and transfer elsewhere to complete an undergraduate degree in engineering.
In January 2012, CSU-Pueblo received approval from the Colorado Commission on Higher Education to offer the Master's of Science
in Engineering. The degree will have emphasis areas in Mechatronics and
Railroad Engineering. Two new courses will be offered in Fall 2012,
Virtual Reality and Advanced Controls. The program is designed for
working professionals and all courses will be offered in the late afternoon or evening.